Shewanella oneidensis MR-1 [gbbct]: 4779 CDS's (1421402 codons)
fields: [triplet] [frequency: per thousand] ([number])
UUU F 0.73 28.7 ( 40750) UCU S 0.14 9.2 ( 13080) UAU Y 0.63 19.3 ( 27439) UGU C 0.54 5.8 ( 8283)
UUC F 0.27 10.8 ( 15386) UCC S 0.10 6.5 ( 9216) UAC Y 0.37 11.3 ( 15995) UGC C 0.46 5.0 ( 7173)
UUA L 0.30 33.1 ( 47078) UCA S 0.17 10.7 ( 15184) UAA * 0.64 2.1 ( 3048) UGA * 0.18 0.6 ( 856)
UUG L 0.16 17.8 ( 25334) UCG S 0.12 8.0 ( 11370) UAG * 0.18 0.6 ( 876) UGG W 1.00 12.8 ( 18134)
CUU L 0.13 14.6 ( 20682) CCU P 0.29 11.8 ( 16750) CAU H 0.63 14.6 ( 20778) CGU R 0.34 16.0 ( 22743)
CUC L 0.13 13.7 ( 19442) CCC P 0.23 9.3 ( 13160) CAC H 0.37 8.6 ( 12265) CGC R 0.34 15.6 ( 22205)
CUA L 0.09 10.0 ( 14202) CCA P 0.30 12.0 ( 16994) CAA Q 0.65 31.7 ( 45113) CGA R 0.10 4.6 ( 6577)
CUG L 0.18 19.9 ( 28337) CCG P 0.18 7.3 ( 10369) CAG Q 0.35 17.2 ( 24428) CGG R 0.08 3.8 ( 5428)
AUU I 0.52 31.0 ( 44015) ACU T 0.25 13.4 ( 19078) AAU N 0.58 23.8 ( 33860) AGU S 0.21 13.9 ( 19765)
AUC I 0.37 22.5 ( 31991) ACC T 0.40 21.2 ( 30202) AAC N 0.42 17.3 ( 24637) AGC S 0.25 16.4 ( 23369)
AUA I 0.11 6.6 ( 9413) ACA T 0.18 9.6 ( 13673) AAA K 0.65 33.6 ( 47738) AGA R 0.09 4.0 ( 5632)
AUG M 1.00 25.2 ( 35886) ACG T 0.18 9.4 ( 13370) AAG K 0.35 18.0 ( 25594) AGG R 0.05 2.4 ( 3411)
GUU V 0.25 16.9 ( 23966) GCU A 0.21 19.9 ( 28329) GAU D 0.72 38.0 ( 53945) GGU G 0.38 25.6 ( 36423)
GUC V 0.19 13.1 ( 18558) GCC A 0.32 29.9 ( 42567) GAC D 0.28 14.8 ( 21102) GGC G 0.39 26.2 ( 37268)
GUA V 0.17 11.7 ( 16579) GCA A 0.22 20.3 ( 28917) GAA E 0.62 35.3 ( 50207) GGA G 0.10 7.0 ( 9986)
GUG V 0.38 25.9 ( 36815) GCG A 0.25 23.3 ( 33115) GAG E 0.38 21.8 ( 30934) GGG G 0.13 8.7 ( 12382)
Coding GC 46.81%
1st letter GC 54.92%
2nd letter GC 39.05%
3rd letter GC 46.46%
Genetic code 11: Eubacterial
List of codon usage for each CDS
[CAUTION: The file is big (> 1000 entries).]
(format)
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